Heinig lab

scPower

Experimental design framework for scRNAseq population studies (eQTL and DE)

hawe2021_meQTL_analyses

Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics

DeepSom

A CNN - based pipeline for calling somatic SNP and INDEL variants without a matched normal

DCM_heart_cell_atlas

Single cell atlas of the hearts of patients with dilated cardiomyopathy

symatrial

Analysis code for the symatrial project

stemi_mofa

Multiomics factor analysis of STEMI patients

POLII_pausing

Code for "Predictive model of transcriptional elongation control identifies trans regulatory factors from chromatin signatures"

QTLnetwork

Prioritize candidate genes by random walks on molecular networks

GR-mediated_gene_repression

Code for the manuscript "Machine learning reveals STAT motifs as predictors for GR-mediated gene repression"

multiomics-network-inference

Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine

eQTLpipeline

Toolset to perform eQTL analysis on HPC systems

heiniglab.github.io

Heinig lab website

gaertner_megakaryocytes

mofa_workflow

Workflow for processing and analyzing multi-omics data with MOFA