hcstubbe's repositories
adv_infection
Analyses scripts for the E2A/p53 infection manuscript
automation-repo
Machine learning and process automation
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
dev_einvironment
A repository for development containers for RStudio and JupyterLab
django-pwa
Looks like an app, feels like an app, but IS NOT an app.
docker_seq
Dockerfiles for sequencing data pipeline
Folder-Structure-Conventions
Folder / directory structure options and naming conventions for software projects
lcars-m2
LCARS-M2 is a lightweight clinical data acquisition and management software for clinical research and other data-focused research projects.
genefindr
A program for finding occurrences of gene identifiers and synonyms in PubMed listed abstracts and linking them to gene sets (e..g. lists from differential gene experssion)
jupyter-lab
Ready-to-run Docker images containing Jupyter applications with CUDA
Porechop_custom
adapter trimmer for Oxford Nanopore reads
pytrim2_old
A python program to trim and demultiplex nanopore reads
sample-apps
Machine Learning sample apps
shiny
Easy interactive web applications with R