Giters
sciai-lab
/
batchlib
Batch procesing for high-throughput screening data
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11
Issues:
70
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sciai-lab/batchlib Issues
Adapt plot function to IgM; make sure that outliers are marked correctly
Closed
4 years ago
Comments count
8
Prepare for proofreading effort
Closed
4 years ago
Comments count
2
Automating analysis workflow
Closed
4 years ago
Comments count
3
Cell tables: add cell anchor
Closed
4 years ago
Comments count
6
Finalize QC
Closed
4 years ago
Comments count
5
Use H1 wells to estimate background; use this for image level QC
Closed
4 years ago
Comments count
5
Finalize exporting of score table
Closed
4 years ago
Comments count
2
Improve reporting, plots and summary table
Closed
4 years ago
Comments count
4
Make networks more robust against localized artifacts
Updated
4 years ago
Comments count
1
Table naming pattern
Closed
4 years ago
Comments count
2
Integrate PlateViewer with the DB
Closed
4 years ago
Comments count
21
Cleanup
Updated
4 years ago
Comments count
2
Improve flat-field correction
Updated
4 years ago
Comments count
12
Improve runtime
Updated
4 years ago
Comments count
6
Heuristics for quality control
Closed
4 years ago
Comments count
22
Which score do we use?
Updated
4 years ago
Comments count
26
Cannot report issue from the Plate Viewer
Closed
4 years ago
Comments count
5
patient_type missing in DB for some plates
Closed
4 years ago
Comments count
1
DB connection issue
Closed
4 years ago
Comments count
5
Keep track of all analysis pipeline parameter
Closed
4 years ago
Comments count
6
Pass plate_background as argument
Closed
4 years ago
Comments count
1
n_cells and n_valid_cells
Closed
4 years ago
Comments count
3
Refactor all_plots function
Closed
4 years ago
Comments count
3
How do we handle different analysis results in same folder?
Closed
4 years ago
Comments count
10
Output validation fails for preprocessing job in case of multiple serum channels
Closed
4 years ago
Comments count
7
Analysis columns visibility
Closed
4 years ago
Comments count
10
Division by zero error
Closed
4 years ago
Comments count
5
Rename semantic channels?
Closed
4 years ago
Comments count
15
Cell feature column: Number of pixels infected vs. control
Closed
4 years ago
Comments count
10
Bug in csv image table
Closed
4 years ago
Comments count
2
Populate all DB collections from `DbResultWriter`
Closed
4 years ago
Covid project database
Closed
4 years ago
Comments count
9
Hdf5 based tables missing
Closed
4 years ago
Comments count
1
Update PixelAnalysisWorkflow
Updated
4 years ago
Strings loaded from h5 tables prefixed with b' and suffixed with '
Closed
4 years ago
Comments count
1
Compute median plate background
Closed
4 years ago
Comments count
1
Compute image background value
Closed
4 years ago
Comments count
1
Compute background corrected ratio score
Closed
4 years ago
Comments count
2
Compute well level scores as median over cells instead of median over the images
Closed
4 years ago
Number of cells column
Closed
4 years ago
Comments count
5
Fraction infected column
Closed
4 years ago
Comments count
2
Tests for Corner Cases
Updated
4 years ago
Comments count
1
Check if we can write tables as varlen string
Updated
4 years ago
Recompute jobs if inputs have changed
Updated
4 years ago
Add columns to table
Closed
4 years ago
Comments count
12
Remove columns from table
Closed
4 years ago
Comments count
8
well, image and objects table
Closed
4 years ago
Comments count
2
More values for outlier detection
Closed
4 years ago
Comments count
4
Log commit of batchlib
Closed
4 years ago
Analysis table name
Closed
4 years ago
Comments count
6
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