Hasnahana Chetia's repositories
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
atac-seq-pipeline
ENCODE ATAC-seq pipeline
cegx_bsExpress
A customised version of bsExpress. Repository moved from BitBucket 22/7/2019.
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
docker-cheat-sheet
Docker Cheat Sheet
tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
ExpansionHunter
A tool for estimating repeat sizes
GenomicSEM
R-package for structural equation modeling based on GWAS summary data
gpt4all
gpt4all: an ecosystem of open-source chatbots trained on a massive collections of clean assistant data including code, stories and dialogue
gptstudio
GPT RStudio addins that enable GPT assisted coding, writing & analysis
HC_FinaleToolkit
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
HG002
A complete diploid human genome
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
MethylScore
Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling
radar
An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny
TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
trgt
Tandem repeat genotyping and visualization from PacBio HiFi data
VOYager_Elife
CompBio app server to host Python and R Shiny web apps