Hasnahana Chetia's repositories
cegx_bsexpress_docker
A dockerised version of bsExpress with significant updates over the previous release. For analysing the methylation status of spike in control sequences for CEGX kits. Repository moved from BitBucket 22/7/2019.
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
atac-seq-pipeline
ENCODE ATAC-seq pipeline
cegx_bsExpress
A customised version of bsExpress. Repository moved from BitBucket 22/7/2019.
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
chromVAR
chromatin Variability Across Regions (of the genome!)
docker-cheat-sheet
Docker Cheat Sheet
tradeSeq
TRAjectory-based Differential Expression analysis for SEQuencing data
ExpansionHunter
A tool for estimating repeat sizes
gpt4all
gpt4all: an ecosystem of open-source chatbots trained on a massive collections of clean assistant data including code, stories and dialogue
gptstudio
GPT RStudio addins that enable GPT assisted coding, writing & analysis
HG002
A complete diploid human genome
hic
Analysis of Chromosome Conformation Capture data (Hi-C)
MethylScore
Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling
radar
An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny
TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
trgt
Tandem repeat genotyping and visualization from PacBio HiFi data