Harvard Chan School: Bioinformatics Core's repositories
knowledgebase
recipes that save time
bcbioRNASeq
R package for bcbio RNA-seq analysis.
bcbioSingleCell
R package for bcbio single-cell RNA-seq analysis.
drosophila-midgut-analysis
Analysis scripts for 'A cell atlas of the adult drosophila midgut'
hbc.github.io
Jekyll based website for the Harvard Chan Bioinformatics Core
hbc_kim_ATACseq_BRG1_hbc04466
ATACseq of BRG1
mammoth_code
python package to find African elephant genes into mammoth assembled genome
Molecular-convergence-between-Down-syndrome-and-Fragile-X-syndrome-hPSCs
Code repository for the paper "Molecular convergence between Down syndrome and Fragile X syndrome identified using human pluripotent stem cell models"
MouseKidneyFibrOmics
Repository with the analysis of two kidney fibrosis models in mouse
wu_hiv_pooled_dr
Call HIV minority variants and annotate with drug resistance mutations
Clark_snRNA_seq_skin_biopsies_hbc04139-
snRNA seq from CTCL skin sample OTC frozen
dou_ChIPseq_cytosolic_DNA_in_senescence_hbc04310
Chip seq analysis of Cytoplasmic chromatin DNA
Platform
place for documentation on how to run pipelines and guidelines for analysis
power_calc_simulations
sample code for running simulation based power calculations