Hasselmonians's repositories
EgocentricBoundaryCells
Matlab code for egocentric boundary cell identification in freely behaving animals
ex-gaussian
Probability densities for exponentially-modified gaussian distributions
CellSorter
Classification using UMAP and kmeans
mle_rhythmicity
An improved method for examining neural single unit rhythmicity using maxmimun likelihood estimation for a parametric distribution of lags.
RatCatcher
A general tool for passing data to the cluster
BandwidthEstimator
Estimate optimal bandwidth parameter for spike train smoothing using MLE leave-one-out cross-validation.
hasselmo-tracking
fundamental algorithm of neocortical function -- no big deal
knowledge-base
repository of documentation for the hasselmo lab
light-modulation
determining whether firing rate is modulated by light/dark conditions
ln-model-of-mec-neurons
Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.
neural-decoder
Produces a model of the relationship between an extrinisic observable signal and an intrinsic covarying spike train
exp-decay-models
find conductance-based models that satisfy exponential decay in firing rate
ImageJ-Automated-Cell-Counter-Algorithm
An algorithm that facilitates cell counting via NIH ImageJ software
Kilosort2
Fast spike sorting with drift correction for up to a thousand channels
MLE-time-course
Estimate the bandwidth parameter for smoothing spike-train data.
parameter-space-neural-models
Exploring the parameter spaces of neural models
Programming-iterview
A simple jupyter notebook to test the undergrads' programming skills.
RodentReconstructorUI
WIP ui for the 3D tracking pipeline
tsne-wrappers
MATLAB wrappers for several commonly used t-SNE implementations