Hasan Alanya's repositories
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
biopython
Official git repository for Biopython (originally converted from CVS)
cbioportal
cBioPortal for Cancer Genomics
gatk
Official code repository for GATK versions 4 and up
MuSiC
Multi-subject Single Cell Deconvolution
Biomedical-ML-with-Python
Introductory workshop teaching python for Data Science and Biomedical Machine Learning
clusterProfiler
:bar_chart: statistical analysis and visualization of functional profiles for genes and gene clusters
CNVRanger
Functionality for CNV analysis
Data-Science
Projects and awesome list for all Data Science fields
deepTools
Tools to process and analyze deep sequencing data.
EnrichmentMapApp
The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
freeCodeCamp
freeCodeCamp.org's open-source codebase and curriculum. Learn to code for free.
hasanalanya
My personal repo
hasanalanya.github.io
Hasan Alanya's personal website
hisat2
Graph-based alignment (Hierarchical Graph FM index)
icons
R package to easily insert web icons to RMarkdown
intro-html
A robot powered training repository :robot:
Intro-to-ChIPseq
Intro to ChIPseq using HPC
jupyterlab
JupyterLab computational environment.
jupyterlab-desktop
JupyterLab desktop application, based on Electron.
master-thesis
A gene co-expression network-based analysis of muscle tissue to reveal novel genes and molecular pathways underlying sarcopenia
nextflow
A DSL for data-driven computational pipelines
seurat-data
Dataset distribution for Seurat
snakemake-class
Class materials for the NIH HPC snakemake class
tensorflow
An Open Source Machine Learning Framework for Everyone
the-art-of-command-line
Master the command line, in one page
workshop-reproducible-research
NBIS/ELIXIR course: Tools for Reproducible Research
ycrc.github.io
documentation repo for the YCRC, see src branch for more info