Harvard Informatics's repositories
PandAnnotate
A python-based alternative to Trinotate for merging herterogeneous transcriptome assembly annotation tables
python-workshop
Python workshop materials
minilimsdb
The database component for MiniLIMS. Used for containerization.
biopython
Official git repository for Biopython (converted from CVS)
DimaApp
Shiny app for Melton lab
dimadb
Proteomics search results database
drvschema
Data schema tool to coordinate validation between Django, REST, and VueJs
geneious
Scripts to parse geneious logs
goalchemy
Relational GO Annotation API
helmod-cli
A HeLmod command line tool
ifxhub
JupyterHub setup for ifx
jobTree
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.
mascot
Containerized version of Mascot
pcoc
Convergent substitution detection tool based on the PCOC model
pelican-plugins
Collection of plugins for the Pelican static site generator
scrappie
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
scRNA-seq-workshop-Fall-2018
Using R with Jupyter / RStudio on Binder
seqdb
Reference database of sequence data based on BioSQL
specify6
Source Code for Specify 6, Biological Collections Management Platform
specifytrees
Tree calculation thing
srivastava
Hofstenia miamia data publication page
wheezy-php55
Dockerfile for debian wheezy with php 5.5 (for CNS)