harisankarsadasivan

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University of Michigan

Ann Arbor

https://web.eecs.umich.edu/~hariss/

Hari Sadasivan's repositories

RawMap

Complements Minimap2 for a fast and efficient Read-Until pipeline

Language:C++MIT11 3 2

DTWax

Accelerated Dynamic Time Warping for ONT Read Until

Language:PythonApache-2.0700

centrifuge

Classifier for metagenomic sequences

Language:C++GPL-3.0100

convolve

Simple demonstration of separable convolutions

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cpp-examples-ml

Legacy OpenCV Machine Learning Examples (2.4.x, C++)

Language:C++LGPL-2.1100

event_detection

Event detection for nanopore sequencing

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fast-cpp-csv-parser

fast-cpp-csv-parser

Language:C++BSD-3-Clause100

fast5

A C++ header-only library for reading Oxford Nanopore Fast5 files

Language:C++MIT100

graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html

Language:C++MIT100

kmer_models

Predictive kmer models for development use

MPL-2.0100

LORA

Long Read Assembler

Language:Python100

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Language:PythonApache-2.0100

python-logistic-regression-demos

python logistic regression demos

100

ReadUntilAccelerator

100

UNCALLED

MIT100

harisankarsadasivan.github.io

Hari's homepage

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kmer_count

prints top n kmers and frequency from piped input

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