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hannyxie's starred repositories

Metagenomic-Analysis-Pipeline

Metagenomic sequence data analysis pipeline

Language:Python1800

interesting-python

有趣的Python爬虫和Python数据分析小项目(Some interesting Python crawlers and data analysis projects)

Language:Jupyter Notebook465600

solana-co-learn

Creators Dao all about Solana source

Language:JavaScript5400

cs-self-learning

计算机自学指南

Language:HTMLMIT5533600

Cuscuta_HGT_ms_code

Stolen genes in parasitic plants: convergent horizontal transfer and crosstalk of mobile nucleic acids

Language:Python800

delly

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

Language:C++BSD-3-Clause42400

syri

Synteny and Rearrangement Identifier

Language:CythonMIT31600

bioread

Utilities to work with files from BIOPAC's AcqKnowlege software

Language:PythonMIT6500

IBSA

software for BSA-seq based on PyQt

Language:Python200

EDA_analysis

Script to process EDA records from AcqKnowledge+Biopack system using Neurokit+Biosppy

Language:Python400

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Language:CGPL-3.0151200

competition-baseline

数据挖掘、计算机视觉、自然语言处理、推荐系统竞赛知识、代码、思路

Language:Jupyter NotebookGPL-3.0420100

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

MIT310900

kmersGWAS

A library for running k-mers based GWAS

Language:C++GPL-3.09900

QTL-seq

QTL-seq pipeline to identify causative mutations responsible for a phenotype

Language:Python4600

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

Language:CNOASSERTION160500

tcp_udp_web_tools-pyqt5

运用逻辑与界面分离的**，使用pyqt5+socket模块编写图形化TCP/UDP/WEB通信工具。

Language:Python29800

tif

Transposon Insertion Finder - Detection of new TE insertions in NGS data

Language:Perl1900

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Language:JavaMIT96500

gatk

Official code repository for GATK versions 4 and up

Language:JavaNOASSERTION167500

FastQC

A quality control analysis tool for high throughput sequencing data

Language:JavaGPL-3.042500

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Language:C++MIT185800

QTLseq-update

Developing an updated version of the QTLseq pipeline by Tagaki et at (2013)

Language:Shell200

interpy-zh

📘《Python进阶》（Intermediate Python - Chinese Version）

Language:CSSApache-2.0645100

zjunet

Command Line Scripts for ZJU (VPN / WLAN / DNS)

Language:ShellGPL-3.029800

MutMap

MutMap pipeline to identify causative mutations responsible for a phenotype

Language:Python4700