Hannes Becher's repositories
duolingo-percentiles
Finishing time and percentile
Euphrasia-demographic-modelling
Code, data, and dadi fits relating to Brown et al. 2022
fastpork
Imported from https://gitlab.com/rahmannlab/fastpork
shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
genome-size-variation
Investigating genome size variation with k-mers
analyseMADN
Generate stats on MADN
MADN.jl
Julia implementation of the "Mensch ärgere dich nicht!" board game
EuphrasiaGS
Scripts and data for Becher et al. 2021
hybidisation_ancestry
Simple simulation of local ancestry after hybridisation and drift.
DsimSLiM
Scripts relating to Becher, Jackson & Charlesworth. Patterns of genetic variability in genomic regions with low rates of recombination.
svsim
Simulation toolbox for structural variations.
Chen2016
Recapitulating what was done in Chen et al. 2016
practice-data
for python practice
PodiSNP
workflow and scripts used to detect SNPs in Podisma