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hannahkimincompbio / hyphy-examples

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HyPhy tutorials

This repository contains various tutorials for HyPhy -- a molecular evolutionary analysis platform. Unless otherwise stated in directory - specific README file, all analyses assume the availability of the most recent HyPhy build. General steps for obtaining one on Linux and OS X systems and running an analysis-file, assuming you have

  • C/C++ toolchains, like GCC or Clang
  • CMake

is as follows

git clone https://github.com/veg/hyphy.git hyphy-develop
cd hyphy-develop
git checkout develop
cmake ./
make -j MP
./HYPHYMP analysis-file --help

Specific tutorial directories have more specific analysis options and examples.

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