Hákon Jónsson's repositories
cpp_progress_bar
C++ function that implements a progress bar in console applications
fermi-lite
Standalone C library for assembling Illumina short reads in small regions
FREEC
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
googletest
Google Test
gperftools
Main gperftools repository
gssw
efficient alignment of strings to partially ordered string graphs
htslib
C library for high-throughput sequencing data formats
intervaltree
a minimal C++ interval tree implementation
Jellyfish
A fast multi-threaded k-mer counter
lancet
Microassembly based somatic variant caller for NGS data
libdivsufsort
A lightweight suffix-sorting library
lichee
Multi-sample cancer phylogeny reconstruction
lru_cache
A thread-safe LRU cache implementation in C++
manta
Structural variant and indel caller for mapped sequencing data
pinchesAndCacti
Library for constructing pinch graphs and cactus graphs
protobuf
Protocol Buffers - Google's data interchange format
RUFUS
RUFUS k-mer based genomic variant detection
sdsl-lite
Succinct Data Structure Library 2.0
sha1
SHA-1 implementation in C++
smithwaterman
smith-waterman-gotoh alignment algorithm
sparsehash
C++ associative containers
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
vg
tools for working with genome variation graphs
vim
The official Vim repository