Hugo Tovar's repositories
bioinformatics_express
Introducción express a la Bioinfomática
bioinformatics
Material para cursos de Bioinformática
VBI_clusterProfiler
# Introducción a clusterProfiler
mk_star_singleend
mk auntomatizatión of single end alignment whit star
mk_daymet_mx_mun_daily
extract daymet daily info for Mexican municipalities
mk_daymet_mx_mun_mont
extract daymet mont average info for mx municipal
mk-mappedto23andme
mk automatization to convert .map .ped plink format to so called "23 and me" format
mk-extract-sra
MK automation of sra to fastq conversion with fasterq-dump
mk-annotation
mk automation of annovar annotation using cosmic db
mk-vcfdecompose
Decompose VCF using RTG Tools vcfdecompose
mk-extendAlign
mk automatic workflow for EA in the INMEGEN
mk-corto
MK automation of corto
mk-bwa-mem
mk automatization BWA MEM align, BAM convert, Picard sort and samtools index
mk-ENA-submiter
MK automatization submit reads to European Nucleotide Archive using Webin command line submission interface
mk_corto_network
Correlation TF network using corto and MK
mk-parallel-aracne
ARACNe parallel and automaticed
mk-singleCell-workflow
Single cell workflow using ddSeeker and Drop-seq tools
ExtendAlign
A computational algorithm for delivering multiple global alignment results originated from local alignments.
mk_star_index
Generate STAR index using mk
mk-adj2sif
automation with mk of the transformation of ARACNe files to sif files
reproducibility_exercise
Ejercicio de reproducibilidad con RStudio
mk_svaba
MK - Structural variation and indel analysis by assembly
mk-trimgalore
MK-trim galore, a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files.
mk_pindel
Automation Pindel detection of breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data
gitignore
A collection of useful .gitignore templates
mk_GTKA_BaseRecalibrator
Base Recalibration of a bunch of bam files using GTKA BaseRecalibrator
mk_picard_markduplicates
Mark Duplicates of a bunch of bam files using Picard