guyleonard

genomics_adventure

Workshop on Genomics - Genomics Adventure

get_jgi_genomes

A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.

taxdump_edit

:seedling: :arrow_right: :deciduous_tree: Add new taxa or taxonomic groups to the NCBI Taxdump files

orthomcl_tools

A couple of tools I find indispensable for post orthomcl down-stream analysis.

busco_hmms_for_anvio

Making BUSCO HMMs useable in Anvi'o.

get_ensembl_genomes

A quick and easy way to download the genomes/predicted proteins of taxa available from ENSEMBL Genomes

sagawe

:white_circle: :arrow_right: :mag: :information_source: A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.

blastocladiella

The genome of Blastocladiella emersonii

evomics_2019

Creating the Virtual Machine (AMI) for the evomics.org Workshops

genome_crossovers

Which genomes are where in the big DBs?

orchard

:seedling: :clipboard: :arrow_right: :8ball: :arrow_right: :palm_tree: :evergreen_tree: :deciduous_tree: - A quick phylogenetic tree building pipeline!

PR2-curation

PR2 curation: a shiny app version of the EukRef data curation pipeline

hyphochytrium

Data files belonging to the Hyphochytrium catenoides Genome Project

assembly-stats

Assembly statistic visualisation

beer_labels

a bunch of designs of labels for my homebrew beers

bioconda-recipes

Conda recipes for the bioconda channel.

evomics_2018

Creating the VM setup for the evomics.org Workshop on Genomics

hugo-academic

The personal website framework for Hugo. Demo at

markdown_readme

Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.

MMseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

orchardDB

:apple: :deciduous_tree: A script to create and populate a local database of amino acid sequences combined with taxonomic information, the AA gene predictions can be retrieved from a variety of genome-portals and then used with the Orchard tree building pipeline.

paramecium

Scripts and data file for An RNAi-dependent punishment for algal elimination in a phototrophic endosymbiosis.

Phylogenomic-analysis

Useful scripts for conducting phylogenomic analyses.

PlanktoScope

Low-cost fluidic microscope for citizen science

protists.co.uk

tadpole-doctor.co.uk

tutorials

A few simple tutorials for our lab group sessions.

Ukraine

Help Ukraine - add ribbon with Ukraine flag into the website you manage, show the anti-war message to Russian users, or block them from your service.

UpSetR

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

web

Web content for Meren Lab