gurbaaz27 / cs690a-clustering-spatial-transcriptomics-data

Course Assignment on Clustering of Spatial Transcriptomics Data

clustering computational-biology computational-genomics k-means-clustering leiden-algorithm louvain-algorithm rna-seq transcriptomics gene-expression variational-autoencoder cancer-genomics deep-learning variational-autoencoders variational-inference visium spatial-transcriptomics

cs690a assignment

the assignment question can be found in assets/ folder

table of content

team
usage
resources

team

shashank katiyar (shashkat [at] iitk [dot] ac [dot] in)
gurbaaz singh nandra (gurbaaz [at] iitk [dot] ac [dot] in)
antreev singh brar (antreev [at] iitk [dot] ac [dot] in)

instructor: dr. hamim zafar

resources

SpaGCN Tutorial

About

Course Assignment on Clustering of Spatial Transcriptomics Data

clustering computational-biology computational-genomics k-means-clustering leiden-algorithm louvain-algorithm rna-seq transcriptomics gene-expression variational-autoencoder cancer-genomics deep-learning variational-autoencoders variational-inference visium spatial-transcriptomics

MIT License

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Language:Jupyter Notebook 98.5%Language:Python 1.5%