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guoqiangu

guoqiangu

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VirID

VirID: An integrated platform for the discovery and characterization of RNA Viruses

Language:PythonLicense:MITStargazers:7Issues:0Issues:0

modeltest

Best-fit model selection

Language:C++License:GPL-3.0Stargazers:72Issues:0Issues:0

CAT_pack

CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

Language:PythonLicense:MITStargazers:172Issues:0Issues:0

OpenRDP

An open-source re-implementation of the RDP4 recombination detection program

Language:PythonLicense:GPL-3.0Stargazers:45Issues:0Issues:0

CoverM

Read coverage calculator for metagenomics

Language:RustLicense:GPL-3.0Stargazers:282Issues:0Issues:0

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

Language:C++License:GPL-3.0Stargazers:578Issues:0Issues:0

MSSPE-design

Language:PerlLicense:NOASSERTIONStargazers:10Issues:0Issues:0

taxonomizr

Parse NCBI taxonomy and accessions to find taxonomic assignments

Language:RLicense:GPL-2.0Stargazers:67Issues:0Issues:0

diamond

Accelerated BLAST compatible local sequence aligner.

Language:C++License:GPL-3.0Stargazers:1003Issues:0Issues:0