guillemylla / Number_genomes_available_in_NCBI

Scripts to get the number of available genomes from a set of lineages

Get information about the available genomes given a list of taxons

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• Author: Guillem Ylla, Ph.D.,
• Post-Doctoral Fellow at Harvard University
• Date: March 2021

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Given a list of taxons (i.e. orders, superorder, species,..) retrieve information about the available genome assemblies in each taxon from NCBI (GeneBank and RefSeq) such as the number of available genome assemblies per taxon, list of the species with available genome per taxon.

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