Guanxiang Liang's repositories
circu_check
Scripts to check contig circularity
Chip-Seq-pipline
This is a general pipeline to analyze CHIP-Seq data
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
gb_taxonomy_tools
GenBank taxonomy processing tools
ggpubr
'ggplot2' Based Publication Ready Plots
sbx_dedup
Sunbeam extension
ggupset
Combination matrix axis for 'ggplot2' to create 'UpSet' plots
gintools
[Dev] Tools for genomic DNA integration analysis
grabseqs
Bulk download all reads from an SRA project
hisss
Snakemake workflow to download and/or align reads to targets and produce useful outputs.
iVirP
Integrative virome pipeline
liang2019VEO
The dynamics of the stool virome in very early onset inflammatory bowel disease
MGV
Supporting code for uncultivated gut virus manuscript
multifastats
Multifastats: Multi-Fasta Sequence Stats. Free python-based program that, from a set of a set of 'fasta' sequences (as group or individually), produces basic outputs and statistics (N50, %GC, molecular weight, cut in kmers and concatenate sequences using defined spacers). And also allows to apply some filters and select subgroups by length and/or type. This runs in Windows, Linux and Mac OS.
PEPPAN
Phylogeny Enhanded Prediction of PAN-genome
sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
sunbeam_neutrino
Downstream analysis after using sunbeam pipeline.