This package provides efficient and scalable handling of flow and mass cytometry data analysis. It provides
- the functionality to read in flow data in the fcs file format as anndata objects
- flow and mass cytometry specific preprocessing tools
- access to the entire scanpy workflow functionality
- GPU support through rapids
Follow https://twitter.com/marenbuettner for updates.
For the code enthusiasts: Find our code base on Github.
You can install pytometry via pip from PyPI:
pip install pytometry
or from GitHub:
pip install git+https://github.com/buettnerlab/pytometry.git
- October 12th 2022: First public release announcement on Twitter
Pytometry is currently a pre-print on bioRxiv.