grst / cell2module

cell2module: gene module discovery from scRNA and scATAC using count-based Bayesian NMF

cell2module

cell2module: gene module discovery from scRNA and scATAC using count-based Bayesian NMF

Getting started

Please refer to the documentation. In particular, the

• API documentation.

Installation

You need to have Python 3.8 or newer installed on your system. If you don't have Python installed, we recommend installing Mambaforge.

There are several alternative options to install cell2module:

1. Install the latest development version:

pip install git+https://github.com/vitkl/cell2module.git@main

Release notes

See the changelog.

Contact

For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.

Citation

t.b.a