Greg Farnum's repositories
full-stack-fastapi-postgresql
Full stack, modern web application generator. Using FastAPI, PostgreSQL as database, Docker, automatic HTTPS and more.
Language:Python000
graylt-2013
Automatically exported from code.google.com/p/graylt-2013
Language:R000
project-diploid-assembly
Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
Language:Jupyter NotebookMIT000
pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Language:CMIT000
python-cli-template
A starting point for building Python Command Line Applications.
Language:Python000