GreenleafLab's repositories
NucleoATAC
nucleosome calling using ATAC-seq
10x-scATAC-2019
Publication Page for Satpathy*, Granja* et al 2019
MPAL-Single-Cell-2019
Publication Page for MPAL Paper 2019
motifmatchr
Fast motif matching in R
brainchromatin
Code used to analyze single cell RNA and ATAC sequencing in developing human brain
NucleoATACR
R package for reading in & working with NucleoATAC outputs
ArchR_2020
Publication Page for ArchR Manuscript 2020
amplicon-smf
Code for processing single-molecule footprinting data on synthetic amplicons (from Doughty*, Hinks*, Schaepe*, et al. 2024).
ImagingStationController
Hardware-control software for a sequencing flowcell imaging station based on GAIIx components
array_analysis
Snakemake pipeline for Greenleaf lab array preprocessing.
JunctionLibrary
Provides modular tools to create junction library