greenTara / msmtools

Tools for estimating and analyzing Markov state models

MSMTools

What is it?

msmtools is an open source collection of algorithms for the estimation and analysis of discrete state space Markov chains via Markov state models (MSM).

The algorithms are implemented using NumPy and SciPy.

Installation

With pip:

pip install msmtools

with conda:

conda install -c https://conda.binstar.org/omnia msmtools

or install latest devel branch with pip:

pip install git+https://github.com/markovmodel/msmtools.git@devel

Support and development

For bug reports/sugguestions/complains please file an issue on GitHub.

Or start a discussion on our mailing list: [e-mail]