gradonion

Yifan Zhou's starred repositories

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

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Guided Sparse Factor Analysis (GSFA) on perturbed single-cell RNA-seq data: https://gradonion.github.io/GSFA_site/

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Lightweight pipeline for processing droplet-based single-cell RNA-seq data

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Differential expression analysis on single-cell CROP-seq data (neural progenitor cells)

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A Bayesian variable selection method that models the relationship between the activity of cis-regulatory elements and target gene expression

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A Snakemake pipeline for processing ATAC-seq reads from various samples into a peak count matrix

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