Beast code in Giters

gpcr's repositories

bears_analyses

Examples of kallisto + sleuth

Language:PythonGPL-3.01 20

data-science-from-scratch

code for Data Science From Scratch book

Language:PythonUnlicense1 20

moloco

A tool for performing multiple-trait colocalization test using GWAS summary statistics

Language:PythonGPL-3.01 20

awesome-datascience

:memo: An awesome Data Science repository to learn and apply for real world problems.

MIT020

awesome-public-datasets

An awesome list of high-quality open datasets in public domains (on-going).

MIT020

comet

CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer

Language:CMIT020

cpic-guidelines

CPIC Guideline Documents

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cpipe

The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline

Language:PythonNOASSERTION020

cricketr

This package can be used to analyze performances of cricketers based on stats from ESPN Cricinfo

Language:RNOASSERTION020

cypiripi

A tool for finding out the CYP2D6/CYP2D7 genotypes in the HTS reads

Language:Python020

Differential-Mutation-Analysis

Differential Mutation Analysis

Language:R020

doc-ANNOVAR

Documentation for the ANNOVAR software

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exac_2015

Companion repo for ExAC paper, 2015

Language:RMIT000

GenVisR

Genome data visualizations

Language:RCC0-1.0020

GermlineEnrichment

Variant calling pipeline for germline enrichment NGS data

Language:Shell020

gwas_scripts

Codebook from my GWAS cookbook

Language:R020

hetio

Hetnets in Python

Language:PythonCC0-1.0020

HotMAPS

Detects hotspot regions for somatic mutations in 3D protein structures

Language:Python020

intropolis

Exon-exon splice junctions across SRA

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kallisto

Near-optimal RNA-Seq quantification

Language:C++NOASSERTION020

mutex

Automatically exported from code.google.com/p/mutex

Language:Java010

mutex.resources

Automatically exported from code.google.com/p/mutex.resources

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ProGENI

Prioritization of Genes Enhanced with Network Information

Language:PythonMIT020

ssec2

Stupid Simple Elastic Compute Cloud

Language:Shell020

tomasetti-vogelstein-cancer-risk

The data from the Tomasetti/Vogelstein paper on cancer risk

Language:R020

UpSetR

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

Language:HTMLNOASSERTION020

vials

Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.

Language:JavaScriptBSD-3-Clause020

xGE

Genome annotation pipeline for variant reporting

Language:Perl020

Yeastriction

Tool to design guideRNAs for CRISPR/Cas9 restriction

Language:JavaScriptMIT020

zmPDSwR

Example R scripts and data for "Practical Data Science with R" by Nina Zumel and John Mount (Manning Publications)

Language:HTMLNOASSERTION020