Pkg.add("Requests")
Pkg.add("LightXML")
Pkg.add("FastaIO")
Pkg.add("ArgParse")
Pkg.add("BioSeq")
or just start the install script:
julia install.jl
An API for Julia to call the BLAST Web API of NCBI and EBI.
usage: WebBLAST.jl [-f FASTA FASTA] [-s SEQUENCE] [-t THRESHOLD] [-h]
fasta_out
WebBLAST
positional arguments:
fasta_out FASTA output file
optional arguments:
-f, --fasta FASTA FASTA
Sequences in FASTA format, Sequence #
-s, --sequence SEQUENCE
Sequence as string
-t, --threshold THRESHOLD
E-Value threshold (type: Float64, default:
0.0)
-h, --help show this help message and exit
Sequence:
julia WebBLAST/WebBLAST.jl -s MNQLQQLQNPGESPPVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAY -t 0.000000000000000000000000000001 out.fasta
FASTA:
julia WebBLAST.jl -f fasta.txt 4