Gökhan Özsari's repositories
Awesome-GNN-based-drug-discovery
This is a curated list of research papers, resources and tools related to using Graph Neural Networks (GNNs) for drug discovery.
Go_Propagation
This repository is created to propagate go terms with respect to the go hierarchy in go_basic.obo file
Single-Cell-Data-Analysis
Notes and studies about single-cell RNA-Seq analysis
PSSMs-SwissProt
This repository contains the link for all Position Specific Scoring Matrices(PSSMs) of all protein in SwissProt(UniProtKB)
ECO_Propagation
This repository is created to propagate evidence codes(ECO) with respect to ECO hierarchy defined in eco.obo.
SPMap_Tool
This repo is to extract protein features using SPMap tool
Metabolomics_Data_Analysis
This repo covers my studies and work about metabolomics data analysis
Useful_Utils
Some tools facilitate your work
Algorithms
A collection of algorithms and data structures
DL4MolecularGraph
Literature of deep learning for graphs in Chemistry and Biology
binder_trial_v1
to try binder
GitHub-Actions-Tutorials
Repo to teach GitHub-Actions in a practical way
GNNPapers
Must-read papers on graph neural networks (GNN)
graphein
Protein Graph Library
GraphGym
Platform for designing and evaluating Graph Neural Networks (GNN)
hello-world
just a trial repository
Interactive_Streamlit_APP_V1
Just a trial for deployment a streamline app
MLOps-zoomcamp-notes
Notes from the course (MLOps-zoomcamp) of DataTalks.Club
pytorch_geometric
Graph Neural Network Library for PyTorch
PytorchGeometricTutorial
Pytorch Geometric Tutorials