Fupan Yao's repositories
gosuzombie
Config files for my GitHub profile.
ICAnet
Independent Component Analysis decipher functional modules for better cell clustering and annotation
RcisTarget
RcisTarget: Transcription factor binding motif enrichment
SICILIAN
Run STAR on single-cell sequencing data and add statistical modeling to increase sensitivity and precision in calling splice junctions.
PoincareMaps
poincaremaps with your own data
MADSEQ
MADSEQ-R package for mosaic aneuploidy detection
PHO-generic-pipeline
generic pipeline scripts for generic people
gpu-pvclust
gputools + pvclust
HoneyBADGER
HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
SingleR
SingleR: Single-cell RNA-seq cell types Recognition
DNF
Integrative drug taxonomy using Similarity Network Fusion
BCB410-inclass
in class exercise
Ontoscope
BCB420 class project to identify "identity defining" transcription factors for cell types.