Beast code in Giters

Grant Nickles's starred repositories

AMPlify

Attentive deep learning model for antimicrobial peptide prediction

Language:PythonNOASSERTION3500

goatools

Python library to handle Gene Ontology (GO) terms

Language:PythonBSD-2-Clause75500

Seo2024_SupData

Supplemental data for paper tilted "A timeline of biosynthetic gene cluster discovery in Aspergillus fumigatus: from characterization to future perspectives."

100

funannotate

Eukaryotic Genome Annotation Pipeline

Language:PythonBSD-2-Clause31200

cblaster

Find clustered hits from a BLAST search

Language:HTMLMIT9100

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Language:PythonApache-2.091800

lsaBGC

lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

Language:PythonBSD-3-Clause3400

FUNGuild

FUNGuild: parsing OTUs into functional guilds

Language:Python10200

bokeh

Interactive Data Visualization in the browser, from Python

Language:TypeScriptBSD-3-Clause1912700

DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

Language:PythonMIT57800

bigslice

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data

Language:PythonAGPL-3.06800

BUSCO_phylogenomics

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

Language:PythonMIT3900

clinker

Gene cluster comparison figure generator

Language:PythonMIT51000

clustermap.js

Language:JavaScriptMIT2800