Global.health's repositories
covid19-omicron
Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern
monkeypox-viz
Monkeypox map visualization 2022
mvp-notes-and-ideas
DEPRECATED
outbreak-schema
Global.health Day Zero Outbreak schema
covid19-variants-summary
This code summarises data from GISAID by epiweek. Outputs and analyses using these data are published in Gonçalves et al. eLife 2022;11:e80556. DOI: https://doi.org/10.7554/eLife.80556
who-report-extractor
Extracts information from WHO briefing report PDFs
fhirflat
ISARIC 3.0 Pipeline - FHIRFlat
monkeypox-report
Monkeypox summary report
Ebola_SitReps_Uganda_2022
Digitizing Ebola SitReps from Uganda
polyflame
Polymorphic Flexible Analytics and Modelling Engine
woah_wahis_flu_a
Repository for code and data associated with influenza A reports in animals to the World Organization for Animal Health