Gregor Lichtner's repositories
pystackreg
A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
fhir.resources
FHIR resources Release R5
pyeditorialmanager
Python interface for querying the editorialmanager journal submission system
cookiecutter-fhir-shorthand
A cookiecutter template for FHIR shorthand projects
publication-list
Fetches all publications of an author from pubmed and adds journal impact factor of the latest JCR edition and of the publication year.
pyperunner
Yet another ETL pipeline runner for python, using multiprocessing and directed acyclic graphs.
fhir-parser
A Python FHIR specification parser and class generator
fsh-validator
FHIR Shorthand Validator unshortens fsh input and validates all defined instances against their profiles.
digital-health-fsh-exercise
Exercise for the lecture on clinical practice guideline digitalization
ig-registry
Registry of published implementation guides
moderncv
A modern curriculum vitae class for LaTeX
napari
napari: a fast, interactive, multi-dimensional image viewer for python
nd2reader
Pure Python library for reading NIS Elements ND2 images and metadata
NoRMCorre
Matlab routines for online non-rigid motion correction of calcium imaging data
pyexpmgr
Simple data science/ML experiment manager to store params, datasets and outputs
python-semantic-release
Automatic semantic versioning for python projects
SpreedictorLDopaParkinson
This project was used for participating in the Subchallenges 2.1-2.3 of the Parkinson's disease digital biomarker DREAM challenge
SpreedictorMPowerParkinson
This project was used for participating in the MPower Subchallenge of the Parkinson's disease digital biomarker DREAM challenge
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
thunderstorm
ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging