glasgowcompbio / LiKInS

File strucutre

• gui/ Contains code related to the software GUI.
• state/ Contaions code related to state management system.
• tests/ Contains testing code and test files.
• data_processing/ Contains code related to the analysis pipeline including analysis calculations and file creation.
• Additionally, output/ and saved_runs/ are used to store persistent data and may or may not exist depending on when the software is run.

Installation

1. Install Python >= 3.7 (activate virtual environment if using one)
2. Clone this GitHub repository:

git clone https://github.com/MarcElrick/LiKInS.git

3. Install requirements:

cd LiKInS
pip install -r requirements.txt

4. Run:

python main.py

Build instructions

Requirements

• Python 3.7
• Packages: listed in requirements.txt
• Tested on Windows 10

To Compile Locally

• pip install pyinstaller
• pyinstaller -D main.spec
• Compiled directory found at /dist/main. Run via main.exe.

Running Tests

• python -m unittest discover -p test_unit*