gl-eb / mbarq_app

mBARq app

Streamlit application to run a versatile and user-friendly framework for the analysis and interpretation of RB-TnSeq and other barcoded sequencing data.

Changes for deploy:

• Versions relaxed in the requirements file:

  • altair == 4.2
  • streamlit == 1.23.1
  • biopython == 1.79

• The old requirements file is preserved in requirements_bu20240115.txt

Instructions to deploy in the server

• Access the micro-flask server micro-flask-dev.ethz.ch
• Activate mbarq conda environment, installed using the requirements.txt file

conda activate mbarq

• Run streamlit specifying the port

streamlit run streamlit_app.py --server.port 55556

• Run it in a screen session to keep it open