gkarthik

Karthik's repositories

ivar

Language:C++GPL-3.04 4 1

beast-beagle-docker

Language:Dockerfile2 20

floki

Language:C++2 1 1

floki-dashboard

Language:TypeScript2 40

veme-2021-tutorial

Language:Jupyter Notebook2 2 1

beast-mcmc

Bayesian Evolutionary Analysis Sampling Trees

Language:JavaLGPL-2.11 30

downsample-sc2

Language:PythonGPL-3.0100

transmission-rule-out

Estimating the power of SARS-CoV-2 genomic data to rule-out transmission events.

Language:Jupyter NotebookMIT1 10

zika-cuba

Language:R1 30

Applied-Bioinformatics-HW

020

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

Language:PythonCC-BY-4.0010

baltic

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

Language:PythonGPL-3.0010

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell010

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Language:CGPL-3.0020

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

010

covid_sequencing_analysis_pipeline

AWS optimized pipeline based on https://github.com/niemasd/SD-COVID-Sequencing

Language:PythonMIT000

crawl-covid19-cases

Language:Python020

emacs-config

Language:Emacs Lisp010

epidemia

epidemia package

Language:R010

installation_scripts

Installation on Arch

Language:Shell020

invio

Language:Python020

ivar-validation

Language:R020

nanofilt

Filtering and trimming of long read sequencing data

Language:PythonGPL-3.0010

owl-to-neo4j

Language:Java020

Perfect-Posture

Language:Java030

survival-analysis

Language:R020

VIC-Analysis

Data Analysis for VIC

020

VIC-corr-network

Language:JavaScript030

VIC-Data-Explorer

Language:R020

zika-isnv

Zika iSNV detection on nanopore

Language:HTMLMIT020