Rudramani Pokhrel's repositories
MDTrajectoryAnalysisPython
Python and TCL scripts for Molecular Dynamics trajectory analysis
Virtual_Screening
Screening tools for large batches of drugs using AutoDock Vina tools.
Bioinformatics
Bioinformatics tools (Sequence Analysis, molecular recognition, ML/DL tools)
c9_flask_portfolio_app
Flask Portfolio App for students @ Clever Programmer
container-camp
CyVerse Container Camp workshop materials
dockerlabs
Docker - Beginners | Intermediate | Advanced
HPC_SubmitFiles
Submission files for HPC in GPU and CPU mode for NAMD, GROMACS, and VS
MachineLearning
Templates for ML models
VMD_Script
Tcl scripts to extract and analyze Molecular Dynamics Trajectories useful for VMD and NAMD
intro2docker
Basic Docker exercises with CodeSpaces
Pipelines-Wrappers
ATACseq, ChIPseq, RNAseq, WGS, PLAR and cisVar pipeline wrappers
Stochastic_computation
Python scripts for stochastic modeling and simulation
WGCNA_tutorial
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)