GitAlbMN

M3d-Cam

BrainImageNet

HL-HGAT

Heterogeneous Graph Convolutional Neural Network via Hodge-Laplacian

open-fetal-mri

awesome open source tools for fetal MRI analysis

FetalCPSeg

A Deep Attentive Convolutional Neural Network for Automatic Cortical Plate Segmentation in Fetal MRI

mwiexamples

Repository containing example usage of the DEcomposition and Component Analysis of Exponential Signals (DECAES) tool.

multicomponent-T2-toolbox

Non-parametric T2 relaxometry methods for myelin water quantification

DECAES.jl

DEcomposition and Component Analysis of Exponential Signals (DECAES) - a Julia implementation of the UBC Myelin Water Imaging (MWI) toolbox for computing voxelwise T2-distributions of multi spin-echo MRI images.

PreQual

An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images

DiagSet

DiagSet: a dataset for prostate cancer histopathological image classification

conv_arithmetic

A technical report on convolution arithmetic in the context of deep learning

SynthSeg

Contrast-agnostic segmentation of MRI scans

SynthSR

A framework for joint super-resolution and image synthesis, without requiring real training data

ManimML

ManimML is a project focused on providing animations and visualizations of common machine learning concepts with the Manim Community Library.

MITK-Diffusion

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

IPA4LSx

ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX

KUL_FWT

Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator

BRAPH-2

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.

DeepTrack

paintera

TotalSegmentator

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

nnUNet

chest_ct_registration

This repository contains the code for registration of Chest CT done with inspiratory and expiratory breath-hold CT image pairs. The dataset used is COPDGene dataset. The dataset has landmarks for all the inhale-exhale image pairs which are used to calculate the registration error.

psoas_major_muscle_segmentation

psoas-major muscle segmentation

MOOSE

MOOSE (Multi-organ objective segmentation) a data-centric AI solution that generates multilabel organ segmentations to facilitate systemic TB whole-person research.The pipeline is based on nn-UNet and has the capability to segment 120 unique tissue classes from a whole-body 18F-FDG PET/CT image.

KUL_VBG

A workflow to allow Freesurfer recon-all to run on brain image with gliomas

KUL_NIS

KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.

T1ify

Applying style transfer to convert multi-modal MRI images to have a T1 like contrast.

TractSeg

Automatic White Matter Bundle Segmentation

ADID-UNET

A new segment depth network for COVID-19 lung CT scans, Attention Gate-Dense Network- Improved Dilation Convolution-UNET (ADID-UNET)