Giovanni Rapacciuolo's repositories
surrogacy-among-biodiversity-dimensions
Repository for the manuscript "Species diversity as a surrogate for the conservation of phylogenetic and functional diversity in terrestrial vertebrates across the Americas" by Rapacciuolo et al
calcoast.dob
Code to generate calcoast.dob.bio, including the R Shiny apps "explore-places" and "explore-species"
download-inaturalist-observations-cal-coast
Downloading iNaturalist observations of intertidal organims on the California coast
MPA-iNat-explorer
R Shiny application to explore iNaturalist data across California's Marine Protected Areas network
calcoast.dob-analyses
R code to run all analyses underlying the calcoast.dob.bio website, monitoring California's coastal biodiversity from community-contributed data. Not all data used may be openly accessible.
comparing-microbial-and-macro-invertebrate-diversity
Data and code used for the manuscript "Microbes and macro-invertebrates show parallel β-diversity but contrasting α-diversity patterns in a marine natural experiment" by Rapacciuolo et al.
example-predictions
Comma-delimited file with example input data and predictions from a species habitat model
galapagos-biocollections-analysis
Repository to run exploratory analyses of Galapagos biocollections using R
geocompr
Open source book: Geocomputation with R
getting-started-with-R
Learn the bear basics of R by going through this short tutorial
giorap.github.io
Personal website
moderndive_book
Statistical Inference via Data Science: A moderndive into R and the tidyverse
nodiv
the nodiv R package
odonata-occupancy-change
R code to run Bayesian hierarchical occupancy models using NIMBLE: a case study of Californian odonates
r4ds
R for data science
rapidLC_top
Generate Least Concern Red List assessments and point maps for SIS Connect
recorderMetrics
An R package for the analysis of recorder behaviour in citizen science projects
Regional_SDM
Collaborative distribution modeling scripts by the Heritage Network and NatureServe.
SGCN-manuscript
Data and R code supporting the manuscript "The Potential for State-Designated Species of Greatest Conservation Need to Support Landscape Conservation in the United States"
Species-Prioritization-Tool
Species Prioritization Tool for the Bureau of Land Management's Special Status Species
taxa-over-time
Shiny app for plotting California taxa over time using the Berkeley Ecoinformatics Engine
tv-plots
Temporal validation (TV) plots and their associated measures offer a simple tool for testing how well correlative species distribution models model species' observed range changes