gibsramen

qupid

Case-control matching for microbiome data

qadabra

Snakemake workflow for comparison of differential abundance ranks

xebec

Snakemake pipeline for microbiome diversity effect size benchmarking

evident_

Effect size calculations for microbiome data

BIRDMAn_Jr

ganttly

Gantt charts in Python

nvim

q2-stensl

sourcetracker3

BIRDMAn

Bayesian Inferential Regression for Differential Microbiome Analysis

BIRDMAn-demo

empress

A very fast and scalable phylogenetic visualization viewer

evident

gemelli

Gemelli is a toolbox for running both Robust Aitchison PCA (RPCA) and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

gibsramen.github.io

A refreshed version of Hyde for Jekyll 3.x

q2-benchmark

q2-diversity

qadabra-analyses

qupid-analyses

qurro

Visualize differentially ranked features (taxa, metabolites, ...) in tandem with log-ratios of their sample abundances

snakemake-slurm-profile

bento-tools

A Python toolkit for subcellular analysis of spatial transcriptomics data

CLAIM-scAEs

A tutorial for using an autoencoder neural network model to create a visually interpretable latent space of single cell expression data.

cmdstanpy

CmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.

evident-analyses

hercules

QUBO Solver and Heuristic Toolbox

metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

q2-convexhull

QIIME2 plugin for calculating the convex hull as a diversity metric

snakemake

This is the development home of the workflow management system Snakemake. For general information, see

test-action