gibsonMatt

pimpGEA

Repo to accompany paper "Regional differences in the abiotic environment contribute to genomic divergence within a wild tomato species".

AdventOfCode2017

bioneer

a tool for quickly getting the correct bcftools command

dadi_pipeline

An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting goodness of fit tests, and plotting.

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

forecasty

gal-map

interactive map of our galapagos field sites

gibsonMatt.github.io

prettyMap

stacks-pairwise

Calculate pairwise divergence from Stacks genotyping output

fastqc-nxf

galtom

Repo to accompany Galápagos tomato invasion genetics manuscript. Gibson et al. (2020).

gbs_pipeline

testing tassel gbs pipeline for jaltomata gbs data

Genotype-corrector

A useful tool to correct genotype calls for individuals in the RILs with the goal to improve genetic mapping

hello

Classic hello world script in Nextflow language

home

home-server

my microservice homeserver

jaltomataQTL

QTL mapping workflow for BC1 population of Jaltomata.

PopGen.jl

Population Genetics functions in Julia

QB2017_Gibson

qtl

R/qtl: A QTL mapping environment

scripts

general tools

stdpopsim

A library of standard population genetic models

tldR

ui

Beautifully designed components that you can copy and paste into your apps. Accessible. Customizable. Open Source.