Simon Tse's repositories
Relationship-Extraction
Collection of Jupyter notebook and data on my attempt to induce causal relationship from text
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
bartpy
Bayesian Additive Regression Trees For Python
Collection
All my idle script
coreferee
Coreference resolution for English, French, German and Polish, optimised for limited training data and easily extensible for further languages
Deep-Dive-Into-AI-With-MLX-PyTorch
"Deep Dive into AI with MLX and PyTorch" is an educational initiative designed to help anyone interested in AI, specifically in machine learning and deep learning, using Apple's MLX and Meta's PyTorch frameworks.
DomiRank
a repository for DomiRank along with some code to do efficient node removals and largest-connected-component sampling of massive networks
efficient-kan
An efficient pure-PyTorch implementation of Kolmogorov-Arnold Network (KAN).
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
fast-kan
FastKAN: Very Fast Implementation of Kolmogorov-Arnold Networks (KAN)
hummingbird
Hummingbird compiles trained ML models into tensor computation for faster inference.
mlx-examples
Examples in the MLX framework
mlx-kan
KAN (Kolmogorov–Arnold Networks) in the MLX framework
mocafe
mocafe: modeling cancer with FEniCS
pandarallel
A simple and efficient tool to parallelize Pandas operations on all available CPUs
ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
pyfaidx
Efficient pythonic random access to fasta subsequences
pykan
Kolmogorov Arnold Networks
PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
ring-pymol
This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
rustworkx
A high performance Python graph library implemented in Rust.
sklearn-extensions
A consolidated package of small extensions to scikit-learn
sparql-training
This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.
umap
Uniform Manifold Approximation and Projection