Graeme Grimes's repositories
evogen_singularity
Nextflow singularity example
workflows-nextflow
Workflow management with Nextflow and nf-core
genomics_r
R Programming for biologist
mypipeline
nf-core training 2024
wrangling-genomics
nextflow workflow from https://datacarpentry.org/wrangling-genomics/aio.html
2023-10-03-delme
delete this test
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
configs
Config files used to define parameters specific to compute environments at different Institutions
DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
genomics-r-intro
Intro to R and RStudio for Genomics
git-novice
Version Control with Git
gitpodtest
gitpodtest
gpt
gpt
lab-meeting-scheduler
A simple lab meeting scheduler demo produced by chat-gpt
llm_rnaseq_pipeline
Nextflow RNA-Seq pipeline generated by Google Bard, Chat-GPT 3.5 & 4
Mr.-Ranedeer-AI-Tutor
A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nanosv
a pipeline for sv calling using ONT
nextflow_eddie
some example to run on eddie
nextflow_gitpod
A training environment for Nextflow material
nf-co.re
Code and files for the main nf-core website.
oligostan
nextflow pipeline to run oligostan on uoe cluster eddie
r-shiny-distribution-histogram
This repository contains a Shiny app for visualizing histograms of various probability distributions, including Binomial, Poisson, and Normal distributions. The app allows users to adjust distribution parameters, apply log transformation to the counts, and use zero-inflated distributions.
shell-genomics
Introduction to the Command Line for Genomics
statistical-thinking-public-health
Statistical thinking for public health
the-algorithm
Source code for Twitter's Recommendation Algorithm
vcf2tsv
A simple python script to convert vcf files into tsv files