ggloor

CoDaSeq

Functions for compositional analysis of high throughput sequencing

ALDEx_bioc

ALDEx_bioc is the working directory for updating bioconductor

CoDa_microbiome_tutorial

Workshop for NGS'18 conference, Barcelona 2018

compositions

Site that contains musings and code for compositional analysis of high throughput sequencing experiments

ALDEx2_dev

ALDEx tool to examine compositional high-throughput sequence data with Welch's t-test

miseq_bin

Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes

q2-aldex2

qiime2 plugin for aldex2 for differential abundance analysis

book

Frontiers_2017

Supplement for Frontiers article

aIc

tests to see if datasets are compostional

amIcomp

Shiny app for compositional data pathologies and transforms

9545

9545 Bioinformatics 1: R and compositions

CJM_Supplement

Supplementary data for: Compositional analysis: a valid approach to analyze microbiome high throughput sequencing data

recipes

Family and favourite recipes

3390

CoDa_AJS

covid-reentry

cv

cv

datasets

datasets and descriptions

distEffect

Distributional non-parametric effect size package

effect

paper on effect sizes

ggloor.github.io

home page and cv

MIMB_2018

Supplement for Methods in Molecular Biology 2018

petition

Sample letters to send

propr

Ways to measure strength of proportionality

tests-as-linear

Common statistical tests are linear models (or: how to teach stats)

twntyfr

working-papers