Gisela Gabernet's repositories
nf-core-airrflow
Please use the original pipeline http://github.com/nf-core/airrflow
bcr-phylo-simulation
Fork of matsengrp/bcr-phylo-benchmark
bioconda-recipes
Conda recipes for the bioconda channel.
cellranger
UNDER CONSTRUCTION: Nextflow pipeline for executing Cell Ranger
compsi-commons-qc-benchmark-action
A generic github action for conducting scientific QC benchmarks.
epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
lucas_trust4_NPova
Code to analyze bulk RNAseq data with airrflow using TRUST4, compute SHM and calculate %W38L
MS-cladribine-study
Data analysis QMKMK-clad
multi-package-containers
Testing building mulled containers for multi-requirement tools.
nf-core-configs
Config files used to define parameters specific to compute environments at different Institutions.
nf-core-differentialabundance
nf-core differentialabundance fork
nf-core-mag
Assembly and binning of metagenomes
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core-sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
nf-core-scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
nf-core-test-datasets
Test data to be used for automated testing with the nf-core pipelines
nf-core-testpipeline
A small example pipeline used to test new nf-core infrastructure and common code.
nf-core-tools
Python package with helper tools for the nf-core community.
nf-core-website
Code and files for the main nf-core website >>>
pipeline-docs
Docs for QBiC pipelines
pygor3
pygor3 fork
r-alakazam-feedstock
A conda-smithy repository for r-alakazam.
root-tissue-analysis
Pipeline for pH analysis of A. thaliana root tissue
stereotyper
Pipeline to simulate convergence
tower-action
GitHub Action to launch a workflow using Nextflow Tower.