gfudenberg

Geoff Fudenberg's repositories

Sequential regulatory activity predictions with deep convolutional neural networks.

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Conda recipes for the bioconda channel.

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Pandas utilities for tab-delimited and other genomic data files

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A cool place to store your Hi-C

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The tools for your .cool's

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Contains files for the deep learning in genomics primer.

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A web server that allows people to play Hanab, a cooperative card game of logic and reasoning.

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Analysis of Chip-seq using Hi-C features

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A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.

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Polymer simulations of chromosomes and generating "in silico" Hi-C maps

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Language:Jupyter NotebookMIT000