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consulting-handbook

A guide for technical professionals looking to start consulting

res

Research and Engineering Studio (RES) is an AWS supported open source product that enables IT administrators to provide an easy-to-use web portal for scientists and engineers to run technical computing workloads on AWS.

wave

On-demand containers provisioning service

quickstart-hail

Hail on AWS EMR Sample

efficient-evolution

Efficient evolution from protein language models

aws-batch-arch-for-protein-folding

awesome-nextflow

A curated list of nextflow based pipelines

Study-Tracker

Study management software for research organizations.

amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

CellDepot

ABC-Enhancer-Gene-Prediction

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

aws-security-assessment-solution

An AWS tool to help you create a point in time assessment of your AWS account using Prowler.

pileup.js

Interactive in-browser track viewer

org-formation-cli

Better than landingzones!

miniwdl

Workflow Description Language developer tools & local runner

nextflow

A DSL for data-driven computational pipelines

tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

tools

Python package with helper tools for the nf-core community.

Study-Tracker

Study management software for lab-based research organizations

biotech-blueprint-multi-account

The AWS Biotech Blueprint Multi Account is a landing zone for life sciences startups looking to build well architected research environments in the cloud. This CDK based solution creates the infrastructure as code to manage security, identity, and networking across 10s or 100s of accounts.

SparK

Publication quality NGS track plotting

pegasus

A tool for analyzing trascriptomes of millions of single cells.

data-lake-as-code

Data Lake as Code, featuring ChEMBL and OpenTargets

OAD

Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools and AI tools.

biotechblueprint

AWS Biotech Blueprint Multi-Account

glow

An open-source toolkit for large-scale genomic analysis

aws-parallelcluster

AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

fake_sqs

Provides a fake SQS server that you can run locally to test against

testthat

An R 📦 to make testing 😀

manifests

Deploy manifests for Netsil AOC