Kyle Austin Gervers's repositories
amplicon_seq
conda + renv = easily deployed microbiome analysis environments
amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
canopy
Douglas-fir needles + fungi + metabarcoding + LiDAR = insights into canopy community dynamics
ClimateNAr
My fork of the ClimateNAr R package by author and maintainer Tongli Wang
DMM
Code for simulation experiment testing the performance of Dirichlet-multinomial modelling for data of varying attributes.
dwca_hunter
Downloads biodiversity resources from internet and converts them to DarwinCore Archive files
ecoCopula
R package to find species interactions from co-occurrence data
ggtreeDendro
Drawing 'dendrogram' using 'ggtree'
git-gh-demo
Learning git + gh
gllvm
Generalized Linear Latent Variable Models
if-unite-insdc
Index Fungorum + UNITE + INSDC = better taxonomic reference sequences
iNEXT
R package for interpolation and extrapolation
lulu
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
mvabund
mvabund updates
openair
Tools for air quality data analysis
plantecophys
Analysing and Modelling Leaf Gas Exchange Data in R
rarefy-demo
How to use and misuse rarefaction for estimation of alpha-diversity
Spreading-Correction
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).
topoDistance
topoDistance: an R package for calculating topographic paths and distances
worldmet
Easy access to NOAA Integrated Surface Database (ISD) surface meteorological observations