Galina Erikson's repositories
bioinformatics_scripts
Bioinformatics scripts
awesome
A curated list of awesome lists
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
bioconda-recipes
Conda recipes for the bioconda channel.
computer-science-and-engineering
:mortar_board: Path to a free self-taught graduation in Computer Science
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
datasciencecoursera
Repository with my R scripts for the Data Science Specialization on Coursera (Johns Hopkins)
DataScienceSpCourseNotes
Compiled Notes for all 9 courses in the Coursera Data Science Specialization
datasharing
The Leek group guide to data sharing
DeepMP
DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data
flair
Full-Length Alternative Isoform analysis of RNA
Misc
Misc. utilities
myvariant.info
myvariant.info
notes
Lab notes and software usage guides
oneliners
Useful bash one-liners for bioinformatics.
pandasVCF
VCF parser using the Python pandas library
primer_tool
This is a simple program that reads in a file with multiple sequences in fasta format and then finds the primers that are required to join these sequences together using a yeast assembly protocol. Dependency - primer3 (https://github.com/libnano/primer3-py)
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
SG_ADVISER_UI_1.6_8
SG_ADVISER_UI_1.6_8
snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
Wellderly-1
Genetics Research Project to Analyze the Genome of Advanced Aged Subjects