gerbeldo

labo2021

2022-dma-final

api

The API for Cellenics, staying in between the UI and the backends (worker, pipeline)

austral_grafos

biomage-utils

A CLI package for managing Cellenics infrastructure and codebase.

cell-counter-xml

This repository contains functions to process XML data extracted from the ImageJ plugin Cell Counter

cookiecutter-dvc

deepbud

Yeast image segmentation using convolutional neural networks.

DMA_LAB2

tutoriales y código para las clases de Data Mining Avanzado y Laboratorio de Implementación 2 del MDM - Universidad Austral

iac

Cellenics Infrastructure as Code and GitOps repository.

idm_caso2

idm_clasificadores

imagej-plugins

Some custom scripts to ease life in the imagej nightmare.

inframock

A mocked local copy of the Cellenics AWS stack to ease local development and testing.

mcd-aid

nextflow-scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

pipeline

The Cellenics pipeline project for dependency-managed work processing.

rcell2_data

rtccnn

scRNA_pre_process

Processing scRNA-seq data with kallisto|bustools pipeline

ui

Front-end for Cellenics

vitessce

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

worker

k8s workers that execute Python code for experiments.