genouest / docker-galaxy-rstudio-askor

A flavor of rstudio GxIT image for AskoR

Docker RStudio Container for AskoR

This is a customised flavor of https://github.com/hexylena/docker-rstudio-notebook dedicated to AskoR analyses.

Specific R packages are pre-installed.

This image can be used as a Galaxy Interactive Tool.

Installing it as a Galaxy Interactive Tool on a Galaxy instance

First make sure your Galaxy instance is configured to support Interactive Tools.

Then you need to copy the ./interactivetool_rstudio_askor.xml file into $GALAXY_ROOT/tools/interactive/.

Add this new tool to $GALAXY_ROOT/config/tool_conf.xml:

<?xml version='1.0' encoding='utf-8'?>
<toolbox monitor="true">
  [...]
  <section id="interactive_tools" name="Interactive tools">
    [...]
    <tool file="interactive/interactivetool_rstudio_askor.xml" />
  </section>
</toolbox>

And add this tool to $GALAXY_ROOT/config/job_conf.xml: follow the instructions in the Interactive Tools tutorial, and adapt depending on your setup.